Curated BLAST for Genomes

 

Curated BLAST

Searching in Collinsella tanakaei YIT 12063 (GCF_000225705.1)

Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Collinsella tanakaei YIT 12063, or try another query

HMPREF9452_RS03440 HMPREF9452_00682 WP_009140717.1: altronate dehydratase family protein
is similar to:
PaperBLAST

PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae

34% id,
97% cov

GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli
YhaG / b3128: (EC 4.2.1.42) from Escherichia coli
garD / P39829: galactarate dehydratase (EC 4.2.1.42) from Escherichia coli

33% id,
95% cov

HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae

33% id,
95% cov

HMPREF9452_RS02685 HMPREF9452_00529 WP_009140565.1: enolase C-terminal domain-like protein
is similar to:
PaperBLAST

TAGAD_SALTY / Q8ZL58: L-talarate/galactarate dehydratase; TalrD/GalrD; StTGD; EC 4.2.1.156; EC 4.2.1.42 from Salmonella typhimurium
Q8ZL58: L-talarate dehydratase (EC 4.2.1.156); galactarate dehydratase (EC 4.2.1.42) from Salmonella enterica

26% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory