Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Thioalkalivibrio paradoxus ARh 1 (GCF_000227685.2)

Found 48 curated entries in PaperBLAST's database that match '2.1.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thioalkalivibrio paradoxus ARh 1, or try another query

argF THITH_RS09655 THITH_09990 WP_006748313.1: ornithine carbamoyltransferase is similar to:	PaperBLAST
OTCA_PSEAE / P11724: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa	60% id, 98% cov
OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi	58% id, 98% cov
HSERO_RS07185: Ornithine carbamoyltransferase (EC 2.1.3.3) from Herbaspirillum seropedicae	56% id, 99% cov
O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi	54% id, 96% cov
OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus	53% id, 97% cov
Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti	51% id, 99% cov
argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis	50% id, 94% cov
OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis	48% id, 99% cov
OTC_MYCS2 / A0QYS8: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycolicibacterium smegmatis	47% id, 99% cov
Q9PNU6: ornithine carbamoyltransferase (EC 2.1.3.3) from Campylobacter jejuni	45% id, 98% cov
Q5SJ15: ornithine carbamoyltransferase (EC 2.1.3.3) from Thermus thermophilus	45% id, 98% cov
OTC_THET2 / P96134: Ornithine carbamoyltransferase; OTC; OTCase; EC 2.1.3.3 from Thermus thermophilus	45% id, 98% cov
OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum	44% id, 100% cov
OTC_SCHPO / P31317: Ornithine carbamoyltransferase, mitochondrial; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Schizosaccharomyces pombe arg3 / GI\|1204211: ornithine carbamoyltransferase Arg3; EC 2.1.3.3 from Schizosaccharomyces pombe	43% id, 95% cov
OTC / O50039: ornithine carbamoyltransferase (EC 2.1.3.3) from Arabidopsis thaliana	48% id, 81% cov
OTC_RAT / P00481: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Rattus norvegicus	45% id, 86% cov
OTC_MOUSE / P11725: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Mus musculus	44% id, 86% cov
argB / GI\|168017: ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Emericella nidulans	43% id, 88% cov
OTC_SHEEP / P84010: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Ovis aries	44% id, 86% cov
OTC_HUMAN / P00480: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Homo sapiens OTC / P00480: Ornithine carbamoyltransferase, mitochondrial (EC 2.1.3.3) from Homo sapiens P00480: ornithine carbamoyltransferase (EC 2.1.3.3) from Homo sapiens	43% id, 86% cov
OTCC_PSEAE / P08308: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa	38% id, 97% cov
OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli argI / GB\|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli	38% id, 98% cov
OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli	38% id, 96% cov
OTC_CHICK / Q9YHY9: Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Gallus gallus	42% id, 86% cov
OTC_YEAST / P05150: Ornithine carbamoyltransferase; Ornithine transcarbamylase; OTCase; EC 2.1.3.3 from Saccharomyces cerevisiae ARG3 / P05150: ornithine carbamoyltransferase (EC 2.1.3.3) from Saccharomyces cerevisiae	38% id, 95% cov
OTC_MORAB / Q9K4Y9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi	35% id, 100% cov
arcB / E3PX87: ornithine carbamoyltransferase (EC 2.1.3.3) from Acetoanaerobium sticklandii	36% id, 96% cov
OTC2A_PSESH / P68747: Ornithine carbamoyltransferase 2, anabolic; OTCase 2; Ornithine carbamoyltransferase 2, phaseolotoxin-insensitive; Phaseolotoxin-resistant ornithine carbamoyltransferase; Toxin-resistant enzyme; ROCT; EC 2.1.3.3 from Pseudomonas savastanoi P68747: ornithine carbamoyltransferase (EC 2.1.3.3) from Pseudomonas savastanoi	36% id, 96% cov
Q837U7: ornithine carbamoyltransferase (EC 2.1.3.3); putrescine carbamoyltransferase (EC 2.1.3.6) from Enterococcus faecalis	37% id, 91% cov
OTCC_LENHI / Q8G998: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Lentilactobacillus hilgardii	36% id, 94% cov
OTCC_MALP2 / Q8EVF5: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Malacoplasma penetrans	32% id, 96% cov
arcB / P75473: ornithine carbamoyltransferase, catabolic (EC 2.1.3.3) from Mycoplasma pneumoniae	30% id, 96% cov
More...

THITH_RS15550 THITH_16020 WP_006746886.1: aspartate carbamoyltransferase catalytic subunit is similar to:	PaperBLAST
OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus	29% id, 97% cov
OTC_MYCBO / P0A5M9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium bovis OTC_MYCTU / P9WIT9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis P0A5M9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis P9WIT9: ornithine carbamoyltransferase (EC 2.1.3.3) from Mycobacterium tuberculosis	28% id, 99% cov
O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi	28% id, 97% cov
Q5SJ15: ornithine carbamoyltransferase (EC 2.1.3.3) from Thermus thermophilus	27% id, 99% cov
OTC_THET2 / P96134: Ornithine carbamoyltransferase; OTC; OTCase; EC 2.1.3.3 from Thermus thermophilus	27% id, 99% cov
OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum	26% id, 100% cov
OTC_MORAB / Q9K4Y9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi	25% id, 100% cov
Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti	24% id, 100% cov
argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis	26% id, 94% cov
OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi	25% id, 97% cov
HSERO_RS07185: Ornithine carbamoyltransferase (EC 2.1.3.3) from Herbaspirillum seropedicae	26% id, 87% cov
arcB / E3PX87: ornithine carbamoyltransferase (EC 2.1.3.3) from Acetoanaerobium sticklandii	25% id, 81% cov
OTC / O50039: ornithine carbamoyltransferase (EC 2.1.3.3) from Arabidopsis thaliana	23% id, 82% cov
OTC2_ECOLI / P06960: Ornithine carbamoyltransferase subunit F; OTCase-2; EC 2.1.3.3 from Escherichia coli ArgF / b0273: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli argF / P06960: CP4-6 prophage; ornithine carbamoyltransferase ArgF (EC 2.1.3.3) from Escherichia coli	30% id, 56% cov
arcB / P75473: ornithine carbamoyltransferase, catabolic (EC 2.1.3.3) from Mycoplasma pneumoniae	34% id, 48% cov
OTC1_ECOLI / P04391: Ornithine carbamoyltransferase subunit I; OTCase-1; EC 2.1.3.3 from Escherichia coli ArgI / b4254: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli argI / GB\|AAA23483.1: ornithine carbamoyltransferase, subunit I; EC 2.1.3.3 from Escherichia coli argI / P04391: ornithine carbamoyltransferase ArgI (EC 2.1.3.3) from Escherichia coli	29% id, 56% cov
OTCC_MALP2 / Q8EVF5: Ornithine carbamoyltransferase, catabolic; OTCase; EC 2.1.3.3 from Malacoplasma penetrans	33% id, 37% cov
More...

THITH_RS16710 THITH_17235 WP_006746647.1: aspartate carbamoyltransferase is similar to:	PaperBLAST
OTCA_PSEAE / P11724: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pseudomonas aeruginosa	26% id, 99% cov
OTCA_PYRFU / Q51742: Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus Q51742: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus furiosus	25% id, 99% cov
OTC_MORAB / Q9K4Y9: Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Moritella abyssi	25% id, 100% cov
argF / P18186: ArgF (EC 2.1.3.3) from Bacillus subtilis	27% id, 84% cov
Q98BB6: ornithine carbamoyltransferase (EC 2.1.3.3) from Mesorhizobium loti	26% id, 86% cov
O93656: ornithine carbamoyltransferase (EC 2.1.3.3) from Pyrococcus abyssi	26% id, 85% cov
OTC / O50039: ornithine carbamoyltransferase (EC 2.1.3.3) from Arabidopsis thaliana	25% id, 78% cov
OTCC_HALSA / Q48296: Ornithine carbamoyltransferase, catabolic; cOTCase; EC 2.1.3.3 from Halobacterium salinarum arcB / Q48296: ArcB (EC 2.1.3.3) from Halobacterium salinarum Q48296: ornithine carbamoyltransferase (EC 2.1.3.3) from Halobacterium salinarum	31% id, 61% cov
OTC1A_PSESH / Q02047: Ornithine carbamoyltransferase 1, anabolic; OTCase 1; Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive; SOCT; EC 2.1.3.3 from Pseudomonas savastanoi	29% id, 49% cov
HSERO_RS07185: Ornithine carbamoyltransferase (EC 2.1.3.3) from Herbaspirillum seropedicae	35% id, 35% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory