Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio paradoxus ARh 1 (GCF_000227685.2)

Found 80 curated entries in PaperBLAST's database that match '2.5.1.47' as complete word(s).

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Thioalkalivibrio paradoxus ARh 1, or try another query

cysM THITH_RS11720 THITH_12110 WP_025367522.1: cysteine synthase CysM
is similar to:
PaperBLAST

P29848: S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent) (EC 2.5.1.144); cysteine synthase (EC 2.5.1.47) from Salmonella enterica

72% id,
96% cov

CYSM_ECOLI / P16703: Cysteine synthase B; CSase B; O-acetylserine (thiol)-lyase B; OAS-TL B; O-acetylserine sulfhydrylase B; EC 2.5.1.47 from Escherichia coli
CysM / b2421: cysteine synthase B (EC 2.5.1.47; EC 2.5.1.144; EC 4.4.1.1; EC 4.4.1.28) from Escherichia coli
cysM / P16703: cysteine synthase B (EC 2.5.1.47; EC 2.5.1.144; EC 4.4.1.1) from Escherichia coli

71% id,
96% cov

A2GMG5: cysteine synthase (EC 2.5.1.47) from Trichomonas vaginalis

44% id,
99% cov

More...

THITH_RS06230 THITH_06450 WP_006748629.1: aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

49% id,
97% cov

ilvA THITH_RS11140 THITH_11515 WP_006748008.1: threonine ammonia-lyase, biosynthetic
is similar to:
PaperBLAST

Q84IF9: cysteine synthase (EC 2.5.1.47); L-3-cyanoalanine synthase (EC 4.4.1.9) from Geobacillus stearothermophilus

26% id,
92% cov

F5HTD7: cysteine synthase (EC 2.5.1.47) from Mimosa pudica

24% id,
99% cov

A3RM03: cysteine synthase (EC 2.5.1.47) from Glycine max

24% id,
98% cov

More...

thrC THITH_RS04660 THITH_04845 WP_006749007.1: threonine synthase
is similar to:
PaperBLAST

A2GMG5: cysteine synthase (EC 2.5.1.47) from Trichomonas vaginalis

27% id,
88% cov

Q2PZM5: cysteine synthase (EC 2.5.1.47) from Azospirillum brasilense

25% id,
79% cov

CS1 / A2EI82: O-phosphoserine sulfhydrylase monomer (EC 2.5.1.47; EC 2.5.1.65) from Trichomonas vaginalis

30% id,
58% cov

More...

THITH_RS03780 THITH_03910 WP_006745821.1: O-succinylhomoserine sulfhydrylase
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

35% id,
52% cov

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

38% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory