Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio paradoxus ARh 1 (GCF_000227685.2)

Found 1 curated entries in PaperBLAST's database that match '2.6.1.124' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thioalkalivibrio paradoxus ARh 1, or try another query

THITH_RS09650 THITH_09985 WP_006748314.1: aspartate aminotransferase family protein
is similar to:
PaperBLAST

lysJ / Q4JAP8: [amino group carrier protein]-C-terminal-L-glutamyl-γ-L-lysine aminotransferase (EC 2.6.1.118; EC 2.6.1.124) from Sulfolobus acidocaldarius

34% id,
93% cov

hemL THITH_RS02435 THITH_02510 WP_006746091.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

lysJ / Q4JAP8: [amino group carrier protein]-C-terminal-L-glutamyl-γ-L-lysine aminotransferase (EC 2.6.1.118; EC 2.6.1.124) from Sulfolobus acidocaldarius

30% id,
78% cov

THITH_RS08385 THITH_08675 WP_006747519.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:
PaperBLAST

lysJ / Q4JAP8: [amino group carrier protein]-C-terminal-L-glutamyl-γ-L-lysine aminotransferase (EC 2.6.1.118; EC 2.6.1.124) from Sulfolobus acidocaldarius

29% id,
56% cov

lysJ / Q4JAP8: [amino group carrier protein]-C-terminal-L-glutamyl-γ-L-lysine aminotransferase (EC 2.6.1.118; EC 2.6.1.124) from Sulfolobus acidocaldarius

27% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory