Curated BLAST
Searching in Thioalkalivibrio paradoxus ARh 1 (GCF_000227685.2)
Found 15 curated entries in PaperBLAST's database that match '5.1.3.4' as complete word(s).
These curated entries have 8 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Thioalkalivibrio paradoxus ARh 1, or try another query
THITH_RS01680 THITH_01730 WP_006746247.1: class II aldolase/adducin family protein
is similar to: | PaperBLAST |
C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum | 32% id,
94% cov |
CA265_RS08620: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp. | 31% id,
92% cov |
ARAD_ECOLI / P08203: L-ribulose-5-phosphate 4-epimerase AraD; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
AraD / b0061: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli
araD / GB|BAB96630.1: L-ribulose-5-phosphate 4-epimerase; EC 5.1.3.4 from Escherichia coli
araD / P08203: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli | 31% id,
90% cov |
Echvi_0503: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Echinicola vietnamensis | 30% id,
83% cov |
SGBE_ECOLI / P37680: L-ribulose-5-phosphate 4-epimerase SgbE; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YiaS / b3583: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli
sgbE / P37680: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli | 32% id,
79% cov |
ARAD_BACSU / P94525: L-ribulose-5-phosphate 4-epimerase; Phosphoribulose isomerase; EC 5.1.3.4 from Bacillus subtilis | 28% id,
86% cov |
ULAF_ECOLI / P39306: L-ribulose-5-phosphate 4-epimerase UlaF; L-ascorbate utilization protein F; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YjfX / b4198: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli
ulaF / P39306: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli | 41% id,
48% cov |
More... |
THITH_RS04255 THITH_04395 WP_025367269.1: methylthioribulose 1-phosphate dehydratase
is similar to: | PaperBLAST |
ARAD_ECOLI / P08203: L-ribulose-5-phosphate 4-epimerase AraD; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
AraD / b0061: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli
araD / GB|BAB96630.1: L-ribulose-5-phosphate 4-epimerase; EC 5.1.3.4 from Escherichia coli
araD / P08203: L-ribulose-5-phosphate 4-epimerase AraD (EC 5.1.3.4) from Escherichia coli | 30% id,
86% cov |
ARAD_BACSU / P94525: L-ribulose-5-phosphate 4-epimerase; Phosphoribulose isomerase; EC 5.1.3.4 from Bacillus subtilis | 31% id,
81% cov |
SGBE_ECOLI / P37680: L-ribulose-5-phosphate 4-epimerase SgbE; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YiaS / b3583: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli
sgbE / P37680: L-ribulose-5-phosphate 4-epimerase SgbE (EC 5.1.3.4) from Escherichia coli | 30% id,
80% cov |
ULAF_ECOLI / P39306: L-ribulose-5-phosphate 4-epimerase UlaF; L-ascorbate utilization protein F; Phosphoribulose isomerase; EC 5.1.3.4 from Escherichia coli
YjfX / b4198: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli
ulaF / P39306: L-ribulose-5-phosphate 4-epimerase UlaF (EC 5.1.3.4) from Escherichia coli | 28% id,
84% cov |
CA265_RS08620: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Pedobacter sp. | 26% id,
79% cov |
C4B4W3: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Corynebacterium glutamicum | 26% id,
73% cov |
Echvi_0503: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) from Echinicola vietnamensis | 24% id,
78% cov |
More... |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. These were all redundant with annotated proteins.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory