Curated BLAST for Genomes

 

Curated BLAST

Searching in Thioalkalivibrio paradoxus ARh 1 (GCF_000227685.2)

Found 1 curated entries in PaperBLAST's database that match 'acetohydroxyacid synthase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Thioalkalivibrio paradoxus ARh 1, or try another query

ilvB THITH_RS03515 THITH_03625 WP_006745875.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

68% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

761380-763188 (frame +1) on NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

66% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory