Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhodanobacter denitrificans 2APBS1 (GCF_000230695.2)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Rhodanobacter denitrificans 2APBS1, or try another query

R2APBS1_RS03595 R2APBS1_0739 WP_015446916.1: heterodisulfide reductase-related iron-sulfur binding cluster
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

22% id,
52% cov

guaB R2APBS1_RS08655 R2APBS1_1769 WP_015447648.1: IMP dehydrogenase
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

31% id,
37% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

32% id,
26% cov

gltB R2APBS1_RS17130 R2APBS1_3526 WP_015448879.1: glutamate synthase large subunit
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

32% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Did not find any hits to reading frames.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory