Curated BLAST for Genomes

 

Curated BLAST

Searching in Saccharomonospora marina XMU15 (GCF_000244955.1)

Found 19 curated entries in PaperBLAST's database that match '1.1.99.6' as complete word(s).

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Saccharomonospora marina XMU15, or try another query

SACMADRAFT_RS02295 SacmaDRAFT_0471 WP_009152163.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 52% id,
94% cov

RR42_RS17300: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Cupriavidus basilensis

 47% id,
96% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 48% id,
94% cov

More...

SACMADRAFT_RS02285 SacmaDRAFT_0469 WP_009152161.1: heterodisulfide reductase-related iron-sulfur binding cluster
is similar to:		 PaperBLAST

SMc00926: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Sinorhizobium meliloti

 41% id,
95% cov

Psest_3839: D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 37% id,
100% cov

PGA1_c29700: D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) from Phaeobacter inhibens

 40% id,
91% cov

More...

SACMADRAFT_RS27505 SacmaDRAFT_5619 WP_009157109.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

 36% id,
97% cov

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 39% id,
90% cov

RR42_RS17300: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Cupriavidus basilensis

 37% id,
91% cov

More...

SACMADRAFT_RS21065 SacmaDRAFT_4305 WP_009155870.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

DLD_ANAHA / D4MUV9: D-lactate dehydrogenase; EC 1.1.99.6 from Anaerostipes hadrus

 36% id,
97% cov

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 36% id,
95% cov

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 34% id,
99% cov

More...

SACMADRAFT_RS02290 SacmaDRAFT_0470 WP_009152162.1: FAD-binding protein
is similar to:		 PaperBLAST

Psest_3840: D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 36% id,
96% cov

PGA1_c29710: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Phaeobacter inhibens

 31% id,
99% cov

RR42_RS17310: D-lactate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6) from Cupriavidus basilensis

 32% id,
96% cov

More...

SACMADRAFT_RS06040 SacmaDRAFT_1235 WP_009152904.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 29% id,
99% cov

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 27% id,
97% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 31% id,
59% cov

More...

SACMADRAFT_RS23070 SacmaDRAFT_4714 WP_009156266.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 28% id,
93% cov

Psest_3841: D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 27% id,
89% cov

Psest_3840: D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 32% id,
62% cov

More...

SACMADRAFT_RS05330 SacmaDRAFT_1090 WP_009152761.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:		 PaperBLAST

Q9YEU4: D-lactate dehydrogenase (EC 1.1.1.28); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Aeropyrum pernix

 26% id,
69% cov

Q974L0: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Sulfurisphaera tokodaii

 28% id,
61% cov

E6N788: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Candidatus Caldarchaeum

 28% id,
59% cov

More...

SACMADRAFT_RS25310 SacmaDRAFT_5168 WP_157617305.1: (Fe-S)-binding protein
is similar to:		 PaperBLAST

Psest_3839: D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) from Pseudomonas stutzeri

 24% id,
60% cov

SACMADRAFT_RS05780 SacmaDRAFT_1180 WP_009152849.1: FAD-binding protein
is similar to:		 PaperBLAST

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 25% id,
57% cov

G4RPF4: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Thermoproteus tenax

 27% id,
45% cov

SMc00832: D-lactate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6) from Sinorhizobium meliloti

 27% id,
43% cov

SACMADRAFT_RS22425 SacmaDRAFT_4581 WP_009156142.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

DLD_ARCFU / O29853: D-lactate dehydrogenase; EC 1.1.99.6 from Archaeoglobus fulgidus
O29853: D-lactate dehydrogenase (acceptor) (EC 1.1.99.6) from Archaeoglobus fulgidus

 28% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory