Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Saccharomonospora cyanea NA-134 (GCF_000244975.1)

Found 32 curated entries in PaperBLAST's database that match '2.7.1.71' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Saccharomonospora cyanea NA-134, or try another query

SACCYDRAFT_RS09325 SaccyDRAFT_1908 WP_005455645.1: shikimate kinase is similar to:	PaperBLAST
AROK_MYCTU / P9WPY3: Shikimate kinase; SK; EC 2.7.1.71 from Mycobacterium tuberculosis P9WPY3: shikimate kinase (EC 2.7.1.71) from Mycobacterium tuberculosis	52% id, 95% cov
AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli	39% id, 95% cov
CCNA_03103: shikimate kinase (EC 2.7.1.71) from Caulobacter crescentus	44% id, 81% cov
AROL_DICCH / P10880: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Dickeya chrysanthemi	35% id, 98% cov
A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii	38% id, 89% cov
AROL_ECOLI / P0A6E1: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Escherichia coli AroL / b0388: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli aroL / P0A6E1: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli	30% id, 96% cov
Q6GGG1: shikimate kinase (EC 2.7.1.71) from Staphylococcus aureus	28% id, 92% cov
SK2_ARATH / Q8GY88: Shikimate kinase 2, chloroplastic; AtSK2; EC 2.7.1.71 from Arabidopsis thaliana SK2 / Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana Q8GY88: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana	33% id, 53% cov
SK3_ORYSJ / Q7X7H9: Shikimate kinase 3, chloroplastic; OsSK3; EC 2.7.1.71 from Oryza sativa Q7X7H9: shikimate kinase (EC 2.7.1.71) from Oryza sativa	31% id, 56% cov
SK_SOLLC / Q00497: Shikimate kinase, chloroplastic; EC 2.7.1.71 from Solanum lycopersicum	38% id, 40% cov
SK1_ORYSJ / Q5NTH4: Shikimate kinase 1, chloroplastic; OsSK1; EC 2.7.1.71 from Oryza sativa Q5NTH4: shikimate kinase (EC 2.7.1.71) from Oryza sativa	37% id, 39% cov
SK1_ARATH / Q9SJ05: Shikimate kinase 1, chloroplastic; AtSK1; EC 2.7.1.71 from Arabidopsis thaliana SK1 / Q9SJ05: shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana	34% id, 39% cov
More...

SACCYDRAFT_RS01580 SaccyDRAFT_0320 WP_005452978.1: AAA family ATPase is similar to:	PaperBLAST
AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli	33% id, 77% cov
A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii	33% id, 55% cov

aroA SACCYDRAFT_RS16545 SaccyDRAFT_3394 WP_043537348.1: 3-phosphoshikimate 1-carboxyvinyltransferase is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans	34% id, 27% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	31% id, 29% cov

aroB SACCYDRAFT_RS09330 SaccyDRAFT_1909 WP_005455646.1: 3-dehydroquinate synthase is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans	34% id, 24% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	37% id, 9% cov

SACCYDRAFT_RS15830 SaccyDRAFT_3248 WP_005457594.1: gluconokinase is similar to:	PaperBLAST
CCNA_03103: shikimate kinase (EC 2.7.1.71) from Caulobacter crescentus	44% id, 18% cov

SACCYDRAFT_RS09245 SaccyDRAFT_1892 WP_005455628.1: shikimate dehydrogenase is similar to:	PaperBLAST
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	29% id, 18% cov
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans	30% id, 11% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory