Curated BLAST for Genomes

 

Curated BLAST

Searching in Saccharomonospora cyanea NA-134 (GCF_000244975.1)

Found 16 curated entries in PaperBLAST's database that match '4.2.1.9' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Saccharomonospora cyanea NA-134, or try another query

ilvD SACCYDRAFT_RS05065 SaccyDRAFT_1034 WP_005454216.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

Q8NQZ9: dihydroxy-acid dehydratase (EC 4.2.1.9) from Corynebacterium glutamicum

80% id,
100% cov

ILVD_RHIJ3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium johnstonii

67% id,
99% cov

ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides

66% id,
99% cov

More...

ilvD SACCYDRAFT_RS04825 SaccyDRAFT_0985 WP_005454119.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

76% id,
99% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

51% id,
97% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

50% id,
99% cov

More...

ilvD SACCYDRAFT_RS13145 SaccyDRAFT_2705 WP_005456798.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

61% id,
97% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

53% id,
97% cov

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

49% id,
100% cov

More...

SACCYDRAFT_RS19455 SaccyDRAFT_3986 WP_052309135.1: IlvD/Edd family dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

38% id,
97% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

35% id,
99% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

36% id,
91% cov

More...

edd SACCYDRAFT_RS17845 SaccyDRAFT_3658 WP_232283698.1: phosphogluconate dehydratase
is similar to:
PaperBLAST

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

33% id,
99% cov

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

34% id,
95% cov

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

32% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory