Curated BLAST for Genomes

 

Curated BLAST

Searching in Saccharomonospora cyanea NA-134 (GCF_000244975.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Saccharomonospora cyanea NA-134, or try another query

thrC SACCYDRAFT_RS19475 SaccyDRAFT_3990 WP_005458793.1: threonine synthase
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

69% id,
97% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

58% id,
99% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

57% id,
96% cov

More...

thrC SACCYDRAFT_RS07335 SaccyDRAFT_1498 WP_005454968.1: threonine synthase
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

38% id,
98% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

35% id,
95% cov

THRC_METAC / Q8TQD4: Threonine synthase; TS; EC 4.2.3.1 from Methanosarcina acetivorans
GB|AAM05023.1: threonine synthase; EC 4.2.3.1 from Methanosarcina acetivorans

35% id,
92% cov

More...

ilvA SACCYDRAFT_RS15285 SaccyDRAFT_3138 WP_005457438.1: threonine ammonia-lyase IlvA
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

32% id,
87% cov

ilvA SACCYDRAFT_RS20685 SaccyDRAFT_4240 WP_005459140.1: threonine ammonia-lyase
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

29% id,
88% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

29% id,
75% cov

SACCYDRAFT_RS19045 SaccyDRAFT_3904 WP_005458675.1: cysteine synthase
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

25% id,
79% cov

SACCYDRAFT_RS20705 SaccyDRAFT_4244 WP_005459144.1: cystathionine beta-synthase
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

32% id,
29% cov

trpB SACCYDRAFT_RS18020 SaccyDRAFT_3694 WP_005458376.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

37% id,
25% cov

SACCYDRAFT_RS10410 SaccyDRAFT_2126 WP_005455982.1: DUF3375 domain-containing protein
is similar to:
PaperBLAST

THRC_METAC / Q8TQD4: Threonine synthase; TS; EC 4.2.3.1 from Methanosarcina acetivorans
GB|AAM05023.1: threonine synthase; EC 4.2.3.1 from Methanosarcina acetivorans

23% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory