Curated BLAST for Genomes

 

Curated BLAST

Searching in Saccharomonospora cyanea NA-134 (GCF_000244975.1)

Found 22 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Saccharomonospora cyanea NA-134, or try another query

argH SACCYDRAFT_RS16620 SaccyDRAFT_3408 WP_005457877.1: argininosuccinate lyase
is similar to:
PaperBLAST

6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis

70% id,
99% cov

argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus

71% id,
98% cov

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

71% id,
98% cov

More...

SACCYDRAFT_RS10785 SaccyDRAFT_2205 WP_005456097.1: lyase family protein
is similar to:
PaperBLAST

2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine

33% id,
97% cov

6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis

31% id,
95% cov

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

31% id,
92% cov

More...

SACCYDRAFT_RS20440 SaccyDRAFT_4188 WP_043536739.1: class II fumarate hydratase
is similar to:
PaperBLAST

ARG7 / CAA09001.1: argininosuccinate lyase from Chlamydomonas reinhardtii

27% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3549444-3550919 (frame -2) on NZ_CM001440.1 Saccharomonospora cyanea NA-134 chromosome, whole genome shotgun sequence
is similar to:
PaperBLAST

argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus
Also see hits to annotated proteins above

71% id,
99% cov

ARLY_HUMAN / P04424: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Homo sapiens
ASL / P04424: argininosuccinate lyase (EC 4.3.2.1) from Homo sapiens
Also see hits to annotated proteins above

44% id,
100% cov

ARLY_MOUSE / Q91YI0: Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Mus musculus
Also see hits to annotated proteins above

44% id,
99% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory