Curated BLAST for Genomes

 

Curated BLAST

Searching in Megamonas funiformis YIT 11815 (GCF_000245775.1)

Found 7 curated entries in PaperBLAST's database that match '1.1.1.376' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Megamonas funiformis YIT 11815, or try another query

HMPREF9454_RS08440 HMPREF9454_01716 WP_008539174.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii

22% id,
94% cov

iolG HMPREF9454_RS08420 HMPREF9454_01712 WP_008539168.1: inositol 2-dehydrogenase
is similar to:
PaperBLAST

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

22% id,
87% cov

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii

24% id,
41% cov

HMPREF9454_RS03865 HMPREF9454_00808 WP_008538067.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii

26% id,
73% cov

HMPREF9454_RS09510 HMPREF9454_01934 WP_008539457.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii

22% id,
64% cov

ARAA_AZOBR / Q53TZ2: L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense

29% id,
36% cov

HMPREF9454_RS06075 HMPREF9454_01260 WP_008538565.1: Gfo/Idh/MocA family oxidoreductase
is similar to:
PaperBLAST

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii

25% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1215563-1216558 (frame +2) on NZ_JH601090.1 Megamonas funiformis YIT 11815 supercont1.1, whole genome shotgun sequence
is similar to:
PaperBLAST

D4GR07: L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Haloferax volcanii
Also see hits to annotated proteins above

25% id,
66% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory