Curated BLAST for Genomes

 

Curated BLAST

Searching in Megamonas funiformis YIT 11815 (GCF_000245775.1)

Found 41 curated entries in PaperBLAST's database that match '2.7.1.2' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Megamonas funiformis YIT 11815, or try another query

HMPREF9454_RS09110 HMPREF9454_01853 WP_008539359.1: hexokinase
is similar to:
PaperBLAST

hxk1 / RF|NP_592948.1: hexokinase 1; EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.4; EC 2.7.1.7 from Schizosaccharomyces pombe

34% id,
92% cov

HXKG_ASPNG / Q92407: Glucokinase; Glucose kinase; GLK; Hexokinase glkA; EC 2.7.1.2; EC 2.7.1.1 from Aspergillus niger

30% id,
98% cov

hxk2 / RF|NP_593865.1: hexokinase 2; EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.4; EC 2.7.1.7 from Schizosaccharomyces pombe

31% id,
96% cov

More...

HMPREF9454_RS10520 HMPREF9454_02137 WP_008539728.1: ROK family protein
is similar to:
PaperBLAST

Q8RDE9: glucokinase (EC 2.7.1.2) from Caldanaerobacter subterraneus

30% id,
100% cov

glk: glucokinase; EC 2.7.1.2 from Bacillus megaterium
O31392: glucokinase (EC 2.7.1.2) from Priestia megaterium

29% id,
97% cov

H6UH58: glucokinase (EC 2.7.1.2) from Staphylococcus aureus

30% id,
94% cov

More...

HMPREF9454_RS04930 HMPREF9454_01027 WP_008538310.1: galactokinase family protein
is similar to:
PaperBLAST

B1KRG2: glucokinase (EC 2.7.1.2) from Shewanella woodyi

25% id,
93% cov

B1KDE7: glucokinase (EC 2.7.1.2) from Shewanella woodyi

21% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

206332-207636 (frame +1) on NZ_JH601091.1 Megamonas funiformis YIT 11815 supercont1.2, whole genome shotgun sequence
is similar to:
PaperBLAST

hxk1 / RF|NP_592948.1: hexokinase 1; EC 2.7.1.1; EC 2.7.1.2; EC 2.7.1.4; EC 2.7.1.7 from Schizosaccharomyces pombe
Also see hits to annotated proteins above

34% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory