Curated BLAST for Genomes

 

Curated BLAST

Searching in Megamonas funiformis YIT 11815 (GCF_000245775.1)

Found 6 curated entries in PaperBLAST's database that match '2.7.1.229' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Megamonas funiformis YIT 11815, or try another query

HMPREF9454_RS01920 HMPREF9454_00394 WP_008537595.1: ribokinase
is similar to:
PaperBLAST

DEOK_SALTI / P0DX97: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhi
DEOK_SALTY / Q7CPF5: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhimurium
deoK / Q8XGW5: deoxyribokinase monomer (EC 2.7.1.229) from Salmonella typhi

30% id,
98% cov

HMPREF9454_RS04400 HMPREF9454_00916 WP_008538188.1: carbohydrate kinase family protein
is similar to:
PaperBLAST

DEOK_SALTI / P0DX97: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhi
DEOK_SALTY / Q7CPF5: Deoxyribokinase; dRK; ATP:2-deoxy-D-ribose 5-phosphotransferase; EC 2.7.1.229 from Salmonella typhimurium
deoK / Q8XGW5: deoxyribokinase monomer (EC 2.7.1.229) from Salmonella typhi

22% id,
99% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory