Curated BLAST for Genomes

 

Curated BLAST

Searching in Megamonas funiformis YIT 11815 (GCF_000245775.1)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Megamonas funiformis YIT 11815, or try another query

araA HMPREF9454_RS09240 HMPREF9454_01879 WP_008539391.1: L-arabinose isomerase
is similar to:
PaperBLAST

Q2VMT2: L-arabinose isomerase (EC 5.3.1.4) from Alicyclobacillus acidocaldarius

57% id,
99% cov

F6KRI7: L-arabinose isomerase (EC 5.3.1.4) from Anoxybacillus flavithermus

57% id,
100% cov

ARAA_GEOSE / Q9S467: L-arabinose isomerase; EC 5.3.1.4 from Geobacillus stearothermophilus
Q9S467: L-arabinose isomerase (EC 5.3.1.4) from Geobacillus stearothermophilus

56% id,
100% cov

More...

HMPREF9454_RS10675 HMPREF9454_02168 WP_008539763.1: KpsF/GutQ family sugar-phosphate isomerase
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

53% id,
98% cov

HMPREF9454_RS10525 HMPREF9454_02138 WP_008539729.1: MurR/RpiR family transcriptional regulator
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

29% id,
37% cov

glmS HMPREF9454_RS05935 HMPREF9454_01232 WP_008538534.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

30% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory