Curated BLAST for Genomes

 

Curated BLAST

Searching in Sporolactobacillus vineae DSM 21990 = SL153 (GCF_000246965.1)

Found 52 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Sporolactobacillus vineae DSM 21990 = SL153, or try another query

RH97_RS04800 SVIND2_RS05110 WP_010631204.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
64% cov

trxB RH97_RS08435 SVIND2_RS08965 WP_010631919.1: thioredoxin-disulfide reductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
65% cov

RH97_RS05995 SVIND2_RS06380 WP_010631442.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

23% id,
61% cov

RH97_RS06550 SVIND2_RS06960 WP_010631553.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

31% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

30% id,
44% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

30% id,
44% cov

More...

RH97_RS05000 SVIND2_RS05310 WP_010631244.1: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
47% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

30% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

30% id,
43% cov

More...

RH97_RS05770 SVIND2_RS06145 WP_010631399.1: glutamate synthase subunit beta
is similar to:
PaperBLAST

O59088: proline dehydrogenase (subunit 2/2) (EC 1.5.5.2) from Pyrococcus horikoshii

26% id,
51% cov

RH97_RS02580 SVIND2_RS02770 WP_010630768.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
46% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

28% id,
45% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
45% cov

More...

RH97_RS06270 SVIND2_RS06675 WP_010631499.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
46% cov

RH97_RS06770 SVIND2_RS07200 WP_010631597.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
44% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

26% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

26% id,
44% cov

More...

RH97_RS07655 SVIND2_RS08145 WP_010631766.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

28% id,
28% cov

glpA RH97_RS02200 SVIND2_RS02365 WP_010630691.1: anaerobic glycerol-3-phosphate dehydrogenase subunit GlpA
is similar to:
PaperBLAST

O59088: proline dehydrogenase (subunit 2/2) (EC 1.5.5.2) from Pyrococcus horikoshii

32% id,
18% cov

RH97_RS09225 SVIND2_RS09835 WP_010632077.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

45% id,
10% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

45% id,
10% cov

sdhA RH97_RS00655 SVIND2_RS00710 WP_010630381.1: succinate dehydrogenase flavoprotein subunit
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

37% id,
12% cov

RH97_RS05040 SVIND2_RS05350 WP_010631252.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

51% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 5 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

108600-110273 (frame +3) on NZ_BAEY01000002.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus
Also see hits to annotated proteins above

27% id,
80% cov

213235-214890 (frame +1) on NZ_BAEY01000002.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence
is similar to:
PaperBLAST

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis
Also see hits to annotated proteins above

28% id,
51% cov

HP15_2688: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Marinobacter adhaerens
Also see hits to annotated proteins above

29% id,
42% cov

168086-169540 (frame -2) on NZ_BAEY01000004.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri
Also see hits to annotated proteins above

28% id,
47% cov

putA / Q88D80: proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88; EC 1.5.5.2) from Pseudomonas putida
Also see hits to annotated proteins above

30% id,
36% cov

36708-38282 (frame -2) on NZ_BAEY01000011.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence
is similar to:
PaperBLAST

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

25% id,
49% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

43% id,
12% cov

27461-28165 (frame -2) on NZ_BAEY01000008.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus
Also see hits to annotated proteins above

26% id,
38% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory