Curated BLAST for Genomes

 

Curated BLAST

Searching in Sporolactobacillus vineae DSM 21990 = SL153 (GCF_000246965.1)

Found 37 curated entries in PaperBLAST's database that match '3.5.1.25' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sporolactobacillus vineae DSM 21990 = SL153, or try another query

nagA RH97_RS05120 SVIND2_RS05430 WP_010631270.1: N-acetylglucosamine-6-phosphate deacetylase
is similar to:
PaperBLAST

NAGA_BACSU / O34450: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Bacillus subtilis
CAB15506.1: N-acetylglucosamine 6-phosphate deacetylase (NagA;BSU35010) (EC 3.5.1.25)

48% id,
97% cov

Q8Y8E8: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Listeria monocytogenes

43% id,
99% cov

NAGA_LYSSH / Q84F86: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Lysinibacillus sphaericus

46% id,
92% cov

More...

RH97_RS06105 SVIND2_RS06495 WP_274517442.1: allantoinase
is similar to:
PaperBLAST

Q8Y5F6: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) from Listeria monocytogenes

28% id,
22% cov

NAGA_LYSSH / Q84F86: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Lysinibacillus sphaericus

30% id,
16% cov

allB RH97_RS13510 SVIND2_RS14420 WP_010632901.1: allantoinase AllB
is similar to:
PaperBLAST

NAGA_BACSU / O34450: N-acetylglucosamine-6-phosphate deacetylase; GlcNAc 6-P deacetylase; EC 3.5.1.25 from Bacillus subtilis
CAB15506.1: N-acetylglucosamine 6-phosphate deacetylase (NagA;BSU35010) (EC 3.5.1.25)

35% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory