Curated BLAST for Genomes

 

Curated BLAST

Searching in Sporolactobacillus vineae DSM 21990 = SL153 (GCF_000246965.1)

Found 12 curated entries in PaperBLAST's database that match '3.7.1.22' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Sporolactobacillus vineae DSM 21990 = SL153, or try another query

ilvB RH97_RS06700 SVIND2_RS07120 WP_193379220.1: biosynthetic-type acetolactate synthase large subunit
is similar to:
PaperBLAST

Q9L3I0: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Rhizobium leguminosarum

28% id,
86% cov

PGA1_c07250: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Phaeobacter inhibens

28% id,
80% cov

HSERO_RS12130: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Herbaspirillum seropedicae

25% id,
86% cov

More...

RH97_RS07735 SVIND2_RS08230 WP_026039075.1: acetolactate synthase large subunit
is similar to:
PaperBLAST

AO353_21360: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

25% id,
91% cov

SMc01166: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Sinorhizobium meliloti

26% id,
88% cov

IOLD_BACSU / P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; THcHDO hydrolase; EC 3.7.1.22 from Bacillus subtilis
iolD / P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase (EC 3.7.1.22) from Bacillus subtilis
P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Bacillus subtilis

25% id,
88% cov

More...

RH97_RS05170 SVIND2_RS05485 WP_010631280.1: pyruvate oxidase
is similar to:
PaperBLAST

Q9L3I0: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Rhizobium leguminosarum

25% id,
88% cov

IOLD_BACSU / P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; THcHDO hydrolase; EC 3.7.1.22 from Bacillus subtilis
iolD / P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase (EC 3.7.1.22) from Bacillus subtilis
P42415: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Bacillus subtilis

27% id,
34% cov

alsS RH97_RS05865 SVIND2_RS06240 WP_010631417.1: acetolactate synthase AlsS
is similar to:
PaperBLAST

AO353_21360: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

22% id,
92% cov

AO356_23185: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

23% id,
90% cov

Pf1N1B4_4279: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens

22% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

44999-46804 (frame -2) on NZ_BAEY01000008.1 Sporolactobacillus vineae DSM 21990 = SL153, whole genome shotgun sequence
is similar to:
PaperBLAST

Q9L3I0: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (ring-opening) (EC 3.7.1.22) from Rhizobium leguminosarum
Also see hits to annotated proteins above

26% id,
91% cov

AO353_21360: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Pseudomonas fluorescens
Also see hits to annotated proteins above

25% id,
92% cov

PGA1_c07250: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) from Phaeobacter inhibens
Also see hits to annotated proteins above

24% id,
92% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory