Curated BLAST for Genomes

 

Curated BLAST

Searching in Sporolactobacillus vineae DSM 21990 = SL153 (GCF_000246965.1)

Found 12 curated entries in PaperBLAST's database that match '4.3.1.1' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sporolactobacillus vineae DSM 21990 = SL153, or try another query

RH97_RS01575 SVIND2_RS01695 WP_010630565.1: aspartate ammonia-lyase
is similar to:
PaperBLAST

ASPA_PSEAE / Q9HTD7: Aspartate ammonia-lyase; Aspartase; PA-AspA; EC 4.3.1.1 from Pseudomonas aeruginosa
Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

47% id,
97% cov

ASPA_BACSP / Q9LCC6: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Bacillus sp.
Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

46% id,
98% cov

ASPA_PSECO / P0DXC8: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Pseudomonas canavaninivorans

47% id,
97% cov

More...

fumC RH97_RS04205 SVIND2_RS04480 WP_010631085.1: class II fumarate hydratase
is similar to:
PaperBLAST

ASPA_BACSP / Q9LCC6: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Bacillus sp.
Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

43% id,
98% cov

ASPA_PSEAE / Q9HTD7: Aspartate ammonia-lyase; Aspartase; PA-AspA; EC 4.3.1.1 from Pseudomonas aeruginosa
Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

42% id,
97% cov

ASPA_PSECO / P0DXC8: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Pseudomonas canavaninivorans

41% id,
97% cov

More...

argH RH97_RS10715 SVIND2_RS11410 WP_010632362.1: argininosuccinate lyase
is similar to:
PaperBLAST

ASPA_BACSU / P26899: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Bacillus subtilis

25% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory