Curated BLAST for Genomes

 

Curated BLAST

Searching in Gillisia marina CBA3202 (GCF_000258765.1)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Gillisia marina CBA3202, or try another query

ON07_RS12755 WP_010232136.1: D-2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 31% id,
91% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 30% id,
90% cov

A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli

 28% id,
92% cov

More...

serA ON07_RS11025 WP_010231305.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 30% id,
92% cov

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 31% id,
87% cov

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 27% id,
96% cov

More...

ON07_RS00510 WP_010227316.1: 2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus

 32% id,
85% cov

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera

 30% id,
90% cov

A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus

 29% id,
92% cov

More...

ON07_RS05825 WP_010228948.1: glyoxylate/hydroxypyruvate reductase A
is similar to:		 PaperBLAST

F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus

 29% id,
77% cov

ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum
C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum

 22% id,
97% cov

CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus

 22% id,
97% cov

More...

ON07_RS04180 WP_010228438.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:		 PaperBLAST

G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae

 25% id,
46% cov

A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus

 32% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

50361-51344 (frame -1) on NZ_AJLT01000002.1 Gillisia marina strain CBA3202 c3_(single)_trimmed_contig_2, whole genome shotgun sequence
is similar to:		 PaperBLAST

2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera
Also see hits to annotated proteins above

 29% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory