Curated BLAST for Genomes

 

Curated BLAST

Searching in Moritella dasanensis ArB 0140 (GCF_000276805.1)

Found 3 curated entries in PaperBLAST's database that match '2-deoxy-D-ribonate 3-dehydrogenase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Moritella dasanensis ArB 0140, or try another query

A923_RS0120385 WP_017223545.1: 3-oxoacyl-ACP reductase
is similar to:
PaperBLAST

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

29% id,
97% cov

A923_RS0108875 WP_017221315.1: SDR family oxidoreductase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

30% id,
90% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

32% id,
78% cov

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

33% id,
75% cov

A923_RS0105590 WP_017220676.1: SDR family oxidoreductase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

29% id,
95% cov

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

28% id,
95% cov

A923_RS0100300 WP_017219631.1: glucose 1-dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

27% id,
93% cov

A923_RS0115235 WP_017222544.1: SDR family oxidoreductase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

26% id,
94% cov

A923_RS0103535 WP_017220271.1: SDR family oxidoreductase
is similar to:
PaperBLAST

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

29% id,
80% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

25% id,
81% cov

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

25% id,
80% cov

A923_RS0114000 WP_017222304.1: YciK family oxidoreductase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

25% id,
93% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

30% id,
68% cov

A923_RS0106880 WP_017220932.1: SDR family oxidoreductase
is similar to:
PaperBLAST

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

24% id,
87% cov

A923_RS22555 WP_237716238.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

26% id,
68% cov

A923_RS0104140 WP_017220391.1: SDR family oxidoreductase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

25% id,
71% cov

A923_RS0113230 WP_017222151.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

PS417_07245: 2-deoxy-D-ribonate 3-dehydrogenase from Pseudomonas simiae

22% id,
80% cov

H281DRAFT_00644: 2-deoxy-D-ribonate 3-dehydrogenase from Paraburkholderia bryophila

27% id,
52% cov

BPHYT_RS04775: 2-deoxy-D-ribonate 3-dehydrogenase from Burkholderia phytofirmans

28% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory