Curated BLAST for Genomes

 

Curated BLAST

Searching in Algibacter luteus P7-3-5 (GCF_000283015.1)

Found 13 curated entries in PaperBLAST's database that match '3.1.1.15' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Algibacter luteus P7-3-5, or try another query

P735_RS0114220 WP_019388717.1: SMP-30/gluconolactonase/LRE family protein
is similar to:
PaperBLAST

Ac3H11_615: L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) from Acidovorax sp.

26% id,
87% cov

Shewana3_2088: L-arabinolactonase (EC 3.1.1.15) from Shewanella sp.

27% id,
83% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

6843-7685 (frame -2) on NZ_ALIH01000018.1 Algibacter luteus strain P7-3-5 contig018, whole genome shotgun sequence
is similar to:
PaperBLAST

HSERO_RS05225: L-arabinolactonase (EC 3.1.1.15) from Herbaspirillum seropedicae

25% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory