Curated BLAST for Genomes

 

Curated BLAST

Searching in Leptospirillum ferrooxidans C2-3 (GCF_000284315.1)

Found 73 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 53 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Leptospirillum ferrooxidans C2-3, or try another query

glyA LFE_RS10975 LFE_2135 WP_014450291.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_THET8 / Q5SI56: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Thermus thermophilus
Q5SI56: glycine hydroxymethyltransferase (EC 2.1.2.1) from Thermus thermophilus

63% id,
93% cov

GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus
Q5HE87: glycine hydroxymethyltransferase (EC 2.1.2.1) from Staphylococcus aureus

57% id,
100% cov

GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri
Q46A52: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanosarcina barkeri

56% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory