Curated BLAST for Genomes

 

Curated BLAST

Searching in Actinomyces timonensis DSM 23838 7400942 (GCF_000295095.1)

Found 61 curated entries in PaperBLAST's database that match '1.8.1.4' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Actinomyces timonensis DSM 23838 7400942, or try another query

lpdA A1QA_RS0109790 WP_017178730.1: dihydrolipoyl dehydrogenase
is similar to:		 PaperBLAST

DLDH_HYMDI / P80647: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta

 51% id,
89% cov

B6F1A8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Microbacterium luteolum

 38% id,
99% cov

DLDH_PSEFL / P14218: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of 2-oxoglutarate dehydrogenase complex; EC 1.8.1.4 from Pseudomonas fluorescens

 38% id,
98% cov

More...

A1QA_RS0108485 WP_017178483.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

DLDH_THESS / P85207: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Thermus scotoductus

 36% id,
98% cov

DLDH_MYCTU / P9WHH9: Dihydrolipoyl dehydrogenase; LPD; Component of peroxynitrite reductase/peroxidase complex; Component of PNR/P; Dihydrolipoamide dehydrogenase; E3 component of alpha-ketoacid dehydrogenase complexes; EC 1.8.1.4 from Mycobacterium tuberculosis
P9WHH8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Mycobacterium tuberculosis
P9WHH9: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Mycobacterium tuberculosis

 35% id,
96% cov

Q04829: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Haloferax volcanii

 36% id,
95% cov

More...

trxB A1QA_RS0105185 WP_017177859.1: thioredoxin-disulfide reductase
is similar to:		 PaperBLAST

DLDH_HYMDI / P80647: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta

 42% id,
77% cov

LPD1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Candida albicans

 26% id,
68% cov

DLDH_HUMAN / P09622: Dihydrolipoyl dehydrogenase, mitochondrial; Dihydrolipoamide dehydrogenase; Glycine cleavage system L protein; EC 1.8.1.4 from Homo sapiens
P09622: pyruvate dehydrogenase system (subunit 1/5) (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (subunit 1/4) (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4); dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) from Homo sapiens

 25% id,
62% cov

More...

A1QA_RS0102750 WP_017177400.1: glycerol-3-phosphate dehydrogenase/oxidase
is similar to:		 PaperBLAST

PLPD1_ARATH / A8MS68: Dihydrolipoyl dehydrogenase 1, chloroplastic; ptLPD1; Dihydrolipoamide dehydrogenase 1; Protein LIPOAMIDE DEHYDROGENASE 1; Pyruvate dehydrogenase complex E3 subunit 1; E3-1; PDC-E3 1; EC 1.8.1.4 from Arabidopsis thaliana

 27% id,
30% cov

PLPD2_ARATH / F4JLP5: Dihydrolipoyl dehydrogenase 2, chloroplastic; ptLPD2; Dihydrolipoamide dehydrogenase 2; Protein LIPOAMIDE DEHYDROGENASE 2; Pyruvate dehydrogenase complex E3 subunit 2; E3-2; PDC-E3 2; EC 1.8.1.4 from Arabidopsis thaliana

 38% id,
13% cov

A1QA_RS14275 WP_017178731.1: biotin/lipoyl-containing protein
is similar to:		 PaperBLAST

pdhL: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Cupriavidus necator
Q0KBV8: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Cupriavidus necator

 39% id,
16% cov

acoL: TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Clostridium magnum

 44% id,
13% cov

secD A1QA_RS0109625 WP_017178699.1: protein translocase subunit SecD
is similar to:		 PaperBLAST

lpdA / B3TZD6: dihydrolipoamide dehydrogenase (EC 1.8.1.4) from Advenella kashmirensis

 27% id,
22% cov

A1QA_RS16470 WP_341858214.1: serine/threonine-protein kinase
is similar to:		 PaperBLAST

lpdA / B3TZD6: dihydrolipoamide dehydrogenase (EC 1.8.1.4) from Advenella kashmirensis

 28% id,
19% cov

A1QA_RS0111110 WP_017178980.1: geranylgeranyl reductase family protein
is similar to:		 PaperBLAST

DLDH_ECOLI / P0A9P0: Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; Glycine cleavage system L protein; EC 1.8.1.4 from Escherichia coli
Lpd / b0116: lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli
lpd / SP|P0A9P1: dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Escherichia coli
lpd / P0A9P0: lipoamide dehydrogenase (EC 1.8.1.4) from Escherichia coli
P0A9P0: pyruvate dehydrogenase system (EC 1.2.1.104); 2-oxoglutarate dehydrogenase system (subunit 1/3) (EC 1.2.1.105); glycine cleavage system (EC 1.4.1.27); dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Escherichia coli

 46% id,
11% cov

acoL: TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase; EC 1.8.1.4 from Clostridium magnum

 41% id,
9% cov

A5N930: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Clostridium kluyveri

 44% id,
7% cov

A1QA_RS13395 WP_017177672.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

DLDH_CHATD / G0SB20: Dihydrolipoamide dehydrogenase; Lipoamide dehydrogenase component of pyruvate dehydrogenase complex; Pyruvate dehydrogenase complex E3 component; EC 1.8.1.4 from Chaetomium thermophilum

 38% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

859150-861057 (frame +1) on NZ_JH806633.1 Actinomyces timonensis DSM 23838 strain 7400942 scaffold00002, whole genome shotgun sequence
is similar to:		 PaperBLAST

Q8VPK7: dihydrolipoyl dehydrogenase (EC 1.8.1.4) from Streptococcus pneumoniae
Also see hits to annotated proteins above

 22% id,
56% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory