Curated BLAST for Genomes

 

Curated BLAST

Searching in Rhizobium grahamii CCGE 502 (GCF_000298315.2)

Found 31 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Rhizobium grahamii CCGE 502, or try another query

RGCCGE502_RS11645 RGCCGE502_11696 WP_016554362.1: acetate/propionate family kinase
is similar to:
PaperBLAST

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis

37% id,
99% cov

ACKA_THEMA / Q9WYB1: Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima
ackA / PDB|2IIR_A: acetate kinase; EC 2.7.2.1 from Thermotoga maritima
Q9WYB1: acetate kinase (EC 2.7.2.1) from Thermotoga maritima

36% id,
99% cov

P9WQH1: acetate kinase (EC 2.7.2.1) from Mycobacterium tuberculosis

36% id,
99% cov

More...

RGCCGE502_RS25790 RGCCGE502_26083 WP_016557148.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

29% id,
90% cov

accC RGCCGE502_RS08095 RGCCGE502_08111 WP_016553665.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

22% id,
77% cov

RGCCGE502_RS34205 WP_040676277.1: ATP-grasp domain-containing protein
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

22% id,
63% cov

RGCCGE502_RS15515 RGCCGE502_15585 WP_040674644.1: SulP family inorganic anion transporter
is similar to:
PaperBLAST

E3W769: acetate kinase (EC 2.7.2.1) from Shewanella sp.

32% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory