Curated BLAST for Genomes

 

Curated BLAST

Searching in Gallaecimonas xiamenensis 3-C-1 (GCF_000299915.1)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.378' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Gallaecimonas xiamenensis 3-C-1, or try another query

kduD B3C1_RS16220 B3C1_16209 WP_008486155.1: 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
is similar to:
PaperBLAST

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

40% id,
98% cov

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

39% id,
97% cov

fabG B3C1_RS11585 B3C1_11574 WP_008484996.1: 3-oxoacyl-ACP reductase FabG
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

39% id,
99% cov

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

34% id,
98% cov

fabG B3C1_RS03700 B3C1_03700 WP_008483001.1: 3-oxoacyl-ACP reductase FabG
is similar to:
PaperBLAST

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

35% id,
96% cov

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

34% id,
96% cov

B3C1_RS08890 B3C1_08901 WP_008484313.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

34% id,
100% cov

B3C1_RS00545 B3C1_00530 WP_008482186.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

34% id,
96% cov

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

34% id,
95% cov

phbB B3C1_RS09380 B3C1_09388 WP_035481637.1: acetoacetyl-CoA reductase
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

34% id,
96% cov

B3C1_RS14450 B3C1_14440 WP_008485723.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

34% id,
96% cov

B3C1_RS04225 B3C1_04220 WP_008483140.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

33% id,
97% cov

B3C1_RS05780 B3C1_05752 WP_008483525.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

33% id,
96% cov

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

31% id,
96% cov

B3C1_RS04105 B3C1_04100 WP_008483107.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

31% id,
97% cov

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

29% id,
96% cov

B3C1_RS07720 B3C1_07716 WP_008484010.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

31% id,
96% cov

B3C1_RS10890 B3C1_10882 WP_008484825.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

29% id,
96% cov

B3C1_RS12750 B3C1_12729 WP_008485289.1: YciK family oxidoreductase
is similar to:
PaperBLAST

RHAD_SPHSS / Q1NEJ0: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; SpLRA1; EC 1.1.1.378 from Sphingomonas sp.
lra1 / Q1NEJ0: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Sphingomonas sp.

28% id,
96% cov

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

28% id,
95% cov

B3C1_RS13095 B3C1_13074 WP_008485376.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

31% id,
77% cov

B3C1_RS08540 B3C1_08541 WP_008484222.1: SDR family oxidoreductase
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

26% id,
89% cov

fabI B3C1_RS16125 B3C1_16114 WP_008486134.1: enoyl-ACP reductase FabI
is similar to:
PaperBLAST

RHAD_AZOVD / C1DMX5: L-rhamnose 1-dehydrogenase (NAD(P)(+)); RhaDH; AvLRA1; EC 1.1.1.378 from Azotobacter vinelandii
lra1 / C1DMX5: NAD(P)+-dependent L-rhamnose 1-dehydrogenase (EC 1.1.1.378; EC 1.1.1.173) from Azotobacter vinelandii

23% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory