Curated BLAST for Genomes

 

Curated BLAST

Searching in Galbibacter marinus ck-I2-15 (GCF_000300875.1)

Found 52 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Galbibacter marinus ck-I2-15, or try another query

I215_RS03780 I215_03780 WP_008990629.1: proline dehydrogenase family protein
is similar to:
PaperBLAST

CA265_RS11605: Proline dehydrogenase (EC 1.5.5.2) from Pedobacter sp.

49% id,
97% cov

Echvi_0119: Proline dehydrogenase (EC 1.5.5.2) from Echinicola vietnamensis

47% id,
96% cov

PROD1_ARATH / P92983: Proline dehydrogenase 1, mitochondrial; Osmotic stress-induced proline dehydrogenase; Proline oxidase; Protein EARLY RESPONSIVE TO DEHYDRATION 5; EC 1.5.5.2 from Arabidopsis thaliana
POX1 / P92983: proline dehydrogenase 1 (EC 1.5.5.2) from Arabidopsis thaliana
P92983: proline dehydrogenase (EC 1.5.5.2) from Arabidopsis thaliana

29% id,
84% cov

More...

I215_RS14105 WP_040460530.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

22% id,
96% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

22% id,
92% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

24% id,
51% cov

More...

lpdA I215_RS10700 I215_10690 WP_008991978.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

24% id,
75% cov

I215_RS15575 I215_15653 WP_008992951.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

22% id,
61% cov

I215_RS08785 I215_08792 WP_008991607.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
48% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

30% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

29% id,
44% cov

More...

pruA I215_RS06920 I215_06937 WP_008991251.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

29% id,
46% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

29% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

29% id,
44% cov

More...

I215_RS03585 I215_03585 WP_008990590.1: aldehyde dehydrogenase
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
40% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

28% id,
39% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
41% cov

More...

I215_RS03555 I215_03555 WP_008990584.1: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

22% id,
49% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

25% id,
44% cov

PGA1_c11750: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Phaeobacter inhibens

25% id,
38% cov

More...

I215_RS10450 I215_10435 WP_008991929.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

50% id,
10% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

50% id,
10% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

44% id,
11% cov

More...

I215_RS10030 I215_10018 WP_008991846.1: acetyltransferase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

29% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

44277-45539 (frame +3) on NZ_AMSG01000014.1 Galbibacter marinus strain ck-I2-15 contig14, whole genome shotgun sequence
is similar to:
PaperBLAST

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis
Also see hits to annotated proteins above

41% id,
13% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory