Curated BLAST for Genomes

 

Curated BLAST

Searching in Galbibacter marinus ck-I2-15 (GCF_000300875.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Galbibacter marinus ck-I2-15, or try another query

tpiA I215_RS09580 I215_09581 WP_008991764.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_CAEEL / Q10657: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Caenorhabditis elegans
Q10657: triose-phosphate isomerase (EC 5.3.1.1) from Caenorhabditis elegans

48% id,
98% cov

TPIS_PROCL / F5A6E9: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; Allergen Pro c 8.0101; EC 5.3.1.1; EC 4.2.3.3 from Procambarus clarkii

46% id,
98% cov

Q0ZAG6: triose-phosphate isomerase (EC 5.3.1.1) from Leishmania donovani

47% id,
97% cov

More...

I215_RS01065 I215_01075 WP_008990092.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

49% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory