Curated BLAST for Genomes

 

Curated BLAST

Searching in Pedobacter arcticus A12 (GCF_000302595.1)

Found 31 curated entries in PaperBLAST's database that match '2.7.2.1' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pedobacter arcticus A12, or try another query

B176_RS0110675 WP_017258803.1: acetate/propionate family kinase
is similar to:
PaperBLAST

A2RNG5: acetate kinase (EC 2.7.2.1) from Lactococcus lactis

40% id,
99% cov

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylotuvimicrobium alcaliphilum

39% id,
97% cov

ACKA_BACSU / P37877: Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis

38% id,
99% cov

More...

B176_RS0109435 WP_017258561.1: 5-(carboxyamino)imidazole ribonucleotide synthase
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

25% id,
97% cov

accC B176_RS0100605 WP_017256834.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

23% id,
80% cov

carB B176_RS0117260 WP_017260086.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli

22% id,
69% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory