Curated BLAST for Genomes

 

Curated BLAST

Searching in Oscillibacter ruminantium GH1 (GCF_000307265.1)

Found 60 curated entries in PaperBLAST's database that match '5.1.3.2' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Oscillibacter ruminantium GH1, or try another query

galE ON16_RS07550 WP_040660816.1: UDP-glucose 4-epimerase GalE
is similar to:
PaperBLAST

GALE_STRTR / P21977: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Streptococcus thermophilus
galE / P21977: UDP-glucose-4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus
P21977: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus

57% id,
99% cov

GALE_LACHE / Q7WTB1: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Lactobacillus helveticus

54% id,
100% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

45% id,
99% cov

More...

rfbB ON16_RS00785 WP_040658615.1: dTDP-glucose 4,6-dehydratase
is similar to:
PaperBLAST

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

28% id,
98% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

28% id,
99% cov

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

27% id,
49% cov

rfaD ON16_RS00700 WP_040658588.1: ADP-glyceromanno-heptose 6-epimerase
is similar to:
PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

27% id,
99% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

26% id,
97% cov

A3MUJ4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrobaculum calidifontis

25% id,
99% cov

More...

ON16_RS02700 WP_040659163.1: aldose epimerase family protein
is similar to:
PaperBLAST

Q9HDU3: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schizosaccharomyces pombe

29% id,
45% cov

P04397: UDP-glucose 4-epimerase (EC 5.1.3.2) from Saccharomyces cerevisiae

26% id,
50% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory