Curated BLAST for Genomes

 

Curated BLAST

Searching in Thauera aminoaromatica S2 (GCF_000310185.1)

Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Thauera aminoaromatica S2, or try another query

C665_RS02145 C665_02143 WP_004299043.1: prephenate dehydrogenase/arogenate dehydrogenase family protein
is similar to:
PaperBLAST

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

38% id,
98% cov

O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus

39% id,
87% cov

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

34% id,
92% cov

More...

C665_RS19565 C665_19874 WP_004329722.1: 2-oxo acid dehydrogenase subunit E2
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

54% id,
55% cov

pheA C665_RS02135 C665_02133 WP_004299037.1: prephenate dehydratase
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

34% id,
56% cov

odhB C665_RS17250 C665_17514 WP_004324187.1: 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

32% id,
51% cov

C665_RS16035 C665_16262 WP_004322471.1: dihydrolipoamide acetyltransferase family protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

34% id,
27% cov

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

42% id,
13% cov

C665_RS01365 C665_01352 WP_004298196.1: acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

52% id,
15% cov

C665_RS19570 C665_19879 WP_306415023.1: biotin/lipoyl-containing protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

47% id,
16% cov

C665_RS06535 C665_06629 WP_004303367.1: biotin/lipoyl-containing protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

43% id,
15% cov

C665_RS03410 C665_03452 WP_004300084.1: biotin/lipoyl-containing protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

39% id,
16% cov

C665_RS15735 C665_15968 WP_004322097.1: biotin/lipoyl-containing protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

35% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory