Curated BLAST for Genomes

 

Curated BLAST

Searching in Thauera aminoaromatica S2 (GCF_000310185.1)

Found 73 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 53 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thauera aminoaromatica S2, or try another query

glyA C665_RS13000 C665_13179 WP_004313521.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

A0A069BAT4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia pseudomallei

77% id,
100% cov

B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia

77% id,
100% cov

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae

64% id,
100% cov

More...

glyA C665_RS07900 C665_08015 WP_004304852.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

L7Y8B0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas plecoglossicida

76% id,
100% cov

Pf1N1B4_2454: Serine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

76% id,
100% cov

PfGW456L13_2685: Glycine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

76% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory