Curated BLAST for Genomes

 

Curated BLAST

Searching in Thauera aminoaromatica S2 (GCF_000310185.1)

Found 13 curated entries in PaperBLAST's database that match '2.6.1.48' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Thauera aminoaromatica S2, or try another query

gabT C665_RS13470 C665_13671 WP_004314496.1: 4-aminobutyrate--2-oxoglutarate transaminase
is similar to:		 PaperBLAST

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 62% id,
97% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 61% id,
97% cov

AO353_11510: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 61% id,
97% cov

More...

hemL C665_RS15305 C665_15538 WP_004321319.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:		 PaperBLAST

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 32% id,
100% cov

Pf6N2E2_4013: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas fluorescens

 31% id,
100% cov

DAVT_PSEPK / Q88RB9: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas putida
Q88RB9: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas putida

 31% id,
100% cov

More...

C665_RS01920 C665_01918 WP_004298659.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

A0A0U4XQS6: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 5-aminovalerate transaminase (EC 2.6.1.48) from Corynebacterium glutamicum

 36% id,
89% cov

DAVT_PSEAE / Q9I6M4: 5-aminovalerate aminotransferase DavT; 5-aminovalerate transaminase; Delta-aminovalerate aminotransferase; EC 2.6.1.48 from Pseudomonas aeruginosa
davT / Q9I6M4: 5-aminovalerate aminotransferase (EC 2.6.1.48) from Pseudomonas aeruginosa
Q9I6M4: 5-aminovalerate transaminase (EC 2.6.1.48) from Pseudomonas aeruginosa

 33% id,
93% cov

GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli
puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli

 33% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory