Curated BLAST for Genomes

 

Curated BLAST

Searching in Thauera aminoaromatica S2 (GCF_000310185.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Thauera aminoaromatica S2, or try another query

C665_RS03910 C665_03961 WP_004300679.1: homoserine kinase
is similar to:
PaperBLAST

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa

45% id,
99% cov

Ga0059261_3253: homoserine kinase (EC 2.7.1.39) from Sphingomonas koreensis

37% id,
99% cov

C665_RS02650 C665_02682 WP_004299493.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

32% id,
85% cov

C665_RS01215 C665_01212 WP_004298145.1: helix-turn-helix transcriptional regulator
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

31% id,
68% cov

ispE C665_RS10470 C665_10614 WP_004308354.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

27% id,
58% cov

KHSE_ARATH / Q8L7R2: Homoserine kinase; Protein DOWNY MILDEW RESISTANT 1; EC 2.7.1.39 from Arabidopsis thaliana
hsk / Q8L7R2: homoserine kinase (EC 2.7.1.39) from Arabidopsis thaliana
Q8L7R2: homoserine kinase (EC 2.7.1.39) from Arabidopsis thaliana

24% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory