Curated BLAST for Genomes

 

Curated BLAST

Searching in Thauera aminoaromatica S2 (GCF_000310185.1)

Found 62 curated entries in PaperBLAST's database that match 'Serine hydroxymethyltransferase' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Thauera aminoaromatica S2, or try another query

glyA C665_RS13000 C665_13179 WP_004313521.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate

77% id,
100% cov

Pf1N1B4_2454: Serine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

64% id,
100% cov

AO353_07665: Serine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

63% id,
100% cov

More...

glyA C665_RS07900 C665_08015 WP_004304852.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

Pf1N1B4_2454: Serine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

76% id,
100% cov

AO353_07665: Serine hydroxymethyltransferase (EC 2.1.2.1) from Pseudomonas fluorescens

75% id,
100% cov

GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli
GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
glyA / RF|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli
glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
1dfoB / P0A825: Crystal structure at 2.4 angstrom resolution of e. Coli serine hydroxymethyltransferase in complex with glycine and 5-formyl tetrahydrofolate

70% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory