Curated BLAST for Genomes

 

Curated BLAST

Searching in Thauera aminoaromatica S2 (GCF_000310185.1)

Found 2 curated entries in PaperBLAST's database that match 'acetohydroxy acid synthase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Thauera aminoaromatica S2, or try another query

C665_RS03825 C665_03876 WP_004300548.1: acetolactate synthase 3 catalytic subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

50% id,
97% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

46% id,
93% cov

ilvB C665_RS00880 C665_00907 WP_012585806.1: acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

44% id,
97% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

44% id,
94% cov

gcl C665_RS06915 C665_07031 WP_004303778.1: glyoxylate carboligase
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

35% id,
95% cov

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

36% id,
91% cov

C665_RS08765 C665_08910 WP_004305660.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

35% id,
93% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis

33% id,
91% cov

ipdC C665_RS06075 C665_06169 WP_004302898.1: indolepyruvate/phenylpyruvate decarboxylase
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus

25% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

8886-10685 (frame -1) on NZ_AMXD01000002.1 Thauera aminoaromatica S2 Cont2, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus
Also see hits to annotated proteins above

44% id,
98% cov

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis
Also see hits to annotated proteins above

44% id,
96% cov

19840-21945 (frame -1) on NZ_AMXD01000030.1 Thauera aminoaromatica S2 Cont30, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / AAV52901.1: acetohydroxy acid synthase large subunit from Streptomyces cinnamonensis
Also see hits to annotated proteins above

35% id,
96% cov

ilvB / AAL99356.1: acetohydroxy acid synthase large subunit from Geobacillus stearothermophilus
Also see hits to annotated proteins above

35% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory