Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulforamulus hydrothermalis Lam5 = DSM 18033 type strain: Lam5 = DSM 18033 (GCF_000315365.1)

Found 17 curated entries in PaperBLAST's database that match '4.1.2.14' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulforamulus hydrothermalis Lam5 = DSM 18033 type strain: Lam5 = DSM 18033, or try another query

dapA DESHY_RS12895 DESHY_80072 WP_008413418.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

KDGA_PICTO / Q6KZI8: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxy-galactonate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.14; EC 4.1.2.51; EC 4.1.2.-; EC 4.1.2.21 from Picrophilus torridus

28% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory