Curated BLAST for Genomes

 

Curated BLAST

Searching in Salinicoccus carnicancri Crm (GCF_000330705.1)

Found 13 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Salinicoccus carnicancri Crm, or try another query

C792_RS0101060 WP_017547588.1: prephenate dehydrogenase
is similar to:
PaperBLAST

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

31% id,
93% cov

O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus

27% id,
89% cov

Q8DUW0: prephenate dehydrogenase (EC 1.3.1.12) from Streptococcus mutans

30% id,
75% cov

More...

C792_RS0105255 WP_017548402.1: dihydrolipoamide acetyltransferase family protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

32% id,
67% cov

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

27% id,
37% cov

odhB C792_RS0108190 WP_017548985.1: 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

30% id,
67% cov

C792_RS0108920 WP_017549128.1: dihydrolipoamide acetyltransferase family protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

31% id,
66% cov

C792_RS0107740 WP_017548898.1: dihydrolipoamide acetyltransferase family protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

30% id,
67% cov

C792_RS0113540 WP_017550001.1: dihydrolipoamide acetyltransferase family protein
is similar to:
PaperBLAST

P06959: pyruvate dehydrogenase system (EC 1.2.1.104); prephenate dehydrogenase (EC 1.3.1.12); dihydrolipoyllysine-residue acetyltransferase (EC 2.3.1.12) from Escherichia coli

26% id,
67% cov

C792_RS0111040 WP_017549512.1: prephenate dehydratase domain-containing protein
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

31% id,
42% cov

C792_RS0104420 WP_017548241.1: NAD/NADP octopine/nopaline dehydrogenase family protein
is similar to:
PaperBLAST

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

32% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

639782-640702 (frame +2) on NZ_ANAM01000008.1 Salinicoccus carnicancri Crm 50.SCCRM.1_8, whole genome shotgun sequence
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus
Also see hits to annotated proteins above

31% id,
43% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory