Curated BLAST for Genomes

 

Curated BLAST

Searching in Salinicoccus carnicancri Crm (GCF_000330705.1)

Found 9 curated entries in PaperBLAST's database that match '2.7.1.7' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Salinicoccus carnicancri Crm, or try another query

C792_RS0107525 WP_017548855.1: ROK family glucokinase
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

32% id,
95% cov

C792_RS0110105 WP_026090318.1: ROK family protein
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

27% id,
94% cov

SMc03109: Mannokinase (EC 2.7.1.7) from Sinorhizobium meliloti

25% id,
99% cov

C792_RS0113075 WP_017549909.1: ROK family transcriptional regulator
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

25% id,
95% cov

C792_RS0109595 WP_017549253.1: ROK family protein
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis

32% id,
59% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

384211-385086 (frame -2) on NZ_ANAM01000008.1 Salinicoccus carnicancri Crm 50.SCCRM.1_8, whole genome shotgun sequence
is similar to:
PaperBLAST

rokA / Q5GBH5: glucokinase / N-acetylglucosamine kinase / mannokinase (EC 2.7.1.7; EC 2.7.1.1; EC 2.7.1.59) from Bacteroides fragilis
Also see hits to annotated proteins above

31% id,
61% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory