Curated BLAST for Genomes

 

Curated BLAST

Searching in Salinicoccus carnicancri Crm (GCF_000330705.1)

Found 68 curated entries in PaperBLAST's database that match '4.2.1.10' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Salinicoccus carnicancri Crm, or try another query

aroD C792_RS0102765 WP_017547915.1: type I 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

AROD_ENTFA / P36923: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Enterococcus faecalis
P36923: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Enterococcus faecalis

35% id,
98% cov

AROD_SALTI / P24670: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Salmonella typhi
P24670: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Salmonella enterica

34% id,
98% cov

AROD_ECOLI / P05194: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10 from Escherichia coli
AroD / b1693: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli
aroD / RF|NP_416208.1: 3-dehydroquinate dehydratase; EC 4.2.1.10 from Escherichia coli
aroD / P05194: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli
P05194: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Escherichia coli

34% id,
98% cov

More...

aroE C792_RS0107150 WP_017548781.1: shikimate dehydrogenase
is similar to:
PaperBLAST

Q6PUG0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

28% id,
50% cov

Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

30% id,
46% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

29% id,
44% cov

More...

ptsG C792_RS0112000 WP_017549698.1: glucose-specific PTS transporter subunit IIBC
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Lancefieldella rimae

27% id,
52% cov

C792_RS0112175 WP_017549733.1: PTS transporter subunit EIIC
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Lancefieldella rimae

25% id,
38% cov

nagE C792_RS0110400 WP_026090320.1: N-acetylglucosamine-specific PTS transporter subunit IIBC
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Lancefieldella rimae

38% id,
23% cov

C792_RS0104165 WP_017548191.1: PTS transporter subunit EIIC
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Lancefieldella rimae

33% id,
26% cov

aroA C792_RS0107955 WP_017548940.1: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

28% id,
27% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

26% id,
28% cov

C792_RS0107950 WP_017548939.1: 3-dehydroquinate synthase family protein
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

33% id,
20% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

32% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory