Curated BLAST for Genomes

 

Curated BLAST

Searching in Salinicoccus carnicancri Crm (GCF_000330705.1)

Found 40 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Salinicoccus carnicancri Crm, or try another query

dapA C792_RS0108265 WP_017549000.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

DAPA_STAAC / Q5HG25: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Staphylococcus aureus
Q5HG25: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Staphylococcus aureus

55% id,
99% cov

DAPA_STAAR / Q6GH13: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Staphylococcus aureus
Q6GH13: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Staphylococcus aureus

55% id,
99% cov

dapA / Q65JG7: dihydrodipicolinate synthase subunit (EC 4.3.3.7) from Bacillus licheniformis

44% id,
95% cov

More...

hpaI C792_RS0112315 WP_017549759.1: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
is similar to:
PaperBLAST

O67216: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Aquifex aeolicus

45% id,
98% cov

Q8RBI5: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Caldanaerobacter subterraneus

41% id,
98% cov

DAPA_PSEAE / Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Pseudomonas aeruginosa
Q9I4W3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Pseudomonas aeruginosa

40% id,
99% cov

More...

C792_RS0112560 WP_017549807.1: dihydrodipicolinate synthase family protein
is similar to:
PaperBLAST

A9CFV4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

33% id,
95% cov

dapA / Q65JG7: dihydrodipicolinate synthase subunit (EC 4.3.3.7) from Bacillus licheniformis

28% id,
100% cov

dapA / Q04796: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bacillus subtilis

28% id,
100% cov

More...

C792_RS0110120 WP_017549329.1: N-acetylneuraminate lyase
is similar to:
PaperBLAST

dapA / Q04796: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bacillus subtilis

25% id,
98% cov

dapA / Q65JG7: dihydrodipicolinate synthase subunit (EC 4.3.3.7) from Bacillus licheniformis

24% id,
98% cov

Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae

28% id,
80% cov

dapB C792_RS0108260 WP_017548999.1: 4-hydroxy-tetrahydrodipicolinate reductase
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

24% id,
79% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory