Curated BLAST for Genomes

 

Curated BLAST

Searching in Mariniradius saccharolyticus AK6 (GCF_000330725.2)

Found 52 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 18 relevant proteins in Mariniradius saccharolyticus AK6, or try another query

C943_RS00910 C943_00207 WP_008623424.1: proline dehydrogenase family protein
is similar to:
PaperBLAST

Echvi_0119: Proline dehydrogenase (EC 1.5.5.2) from Echinicola vietnamensis

69% id,
99% cov

CA265_RS11605: Proline dehydrogenase (EC 1.5.5.2) from Pedobacter sp.

53% id,
100% cov

HYPDH_HUMAN / Q9UF12: Hydroxyproline dehydrogenase; HYPDH; Kidney and liver proline oxidase 1; HsPOX1; Probable proline dehydrogenase 2; Probable proline oxidase 2; EC 1.5.5.3; EC 1.5.5.2 from Homo sapiens

37% id,
56% cov

More...

C943_RS14740 C943_01426 WP_008629302.1: proline dehydrogenase family protein
is similar to:
PaperBLAST

PROD1_BACSU / O32179: Proline dehydrogenase 1; PRODH 1; Proline oxidase 1; EC 1.5.5.2 from Bacillus subtilis

33% id,
97% cov

PROD1_BACNA / Q8RMG1: Proline dehydrogenase 1; PRODH 1; Proline oxidase 1; EC 1.5.5.2 from Bacillus subtilis

33% id,
97% cov

PRODH_THET2 / Q72IB8: Proline dehydrogenase; PRODH; Proline oxidase; TtPRODH; EC 1.5.5.2 from Thermus thermophilus
Q72IB8: proline dehydrogenase (EC 1.5.5.2) from Thermus thermophilus

31% id,
97% cov

More...

C943_RS08195 C943_04415 WP_040479847.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
70% cov

lpdA C943_RS20445 C943_02730 WP_008631804.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
65% cov

trxB C943_RS14060 C943_01272 WP_008628994.1: thioredoxin-disulfide reductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
66% cov

pruA C943_RS09945 C943_00380 WP_008627247.1: L-glutamate gamma-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

33% id,
43% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

29% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

28% id,
44% cov

More...

lpdA C943_RS10830 C943_00569 WP_008627565.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

23% id,
61% cov

C943_RS19630 C943_02555 WP_008631438.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

29% id,
45% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

29% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

29% id,
44% cov

More...

C943_RS01050 C943_02253 WP_008623463.1: YpdA family putative bacillithiol disulfide reductase
is similar to:
PaperBLAST

O59088: proline dehydrogenase (subunit 2/2) (EC 1.5.5.2) from Pyrococcus horikoshii

22% id,
56% cov

C943_RS17085 C943_01951 WP_008630386.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

30% id,
41% cov

PGA1_c11750: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Phaeobacter inhibens

29% id,
38% cov

C943_RS07255 C943_04199 WP_008625960.1: FAD-dependent protein
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
47% cov

C943_RS18585 C943_02329 WP_008630976.1: glutamate synthase subunit beta
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
46% cov

C943_RS05050 C943_03699 WP_008624914.1: aldehyde dehydrogenase family protein
is similar to:
PaperBLAST

HSERO_RS00905: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Herbaspirillum seropedicae

24% id,
38% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

22% id,
41% cov

SO3774: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) from Shewanella oneidensis

22% id,
40% cov

More...

C943_RS19450 C943_02518 WP_008631378.1: glycerol-3-phosphate dehydrogenase/oxidase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

33% id,
15% cov

C943_RS05105 C943_03715 WP_008624945.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

53% id,
9% cov

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

50% id,
9% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

47% id,
9% cov

C943_RS12115 C943_00846 WP_008628107.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

41% id,
11% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

38% id,
11% cov

crtI C943_RS04085 C943_03493 WP_040478966.1: phytoene desaturase family protein
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

51% id,
8% cov

C943_RS17575 C943_02057 WP_245545563.1: FAD-dependent oxidoreductase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

43% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory