Curated BLAST for Genomes

 

Curated BLAST

Searching in Halococcus hamelinensis 100A6 (GCF_000336675.1)

Found 2 curated entries in PaperBLAST's database that match '2.7.1.13' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Halococcus hamelinensis 100A6, or try another query

C447_RS14190 C447_14441 WP_049904537.1: sugar kinase
is similar to:
PaperBLAST

Q0K080: dehydrogluconokinase (EC 2.7.1.13); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus necator

48% id,
96% cov

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

44% id,
94% cov

C447_RS14185 C447_14436 WP_007695123.1: carbohydrate kinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

31% id,
97% cov

pfkB C447_RS02450 C447_02507 WP_007690568.1: 1-phosphofructokinase
is similar to:
PaperBLAST

Q0K080: dehydrogluconokinase (EC 2.7.1.13); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus necator

44% id,
32% cov

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

32% id,
40% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory