Curated BLAST for Genomes

 

Curated BLAST

Searching in Halococcus hamelinensis 100A6 (GCF_000336675.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Halococcus hamelinensis 100A6, or try another query

C447_RS03725 C447_03771 WP_007691078.1: homoserine kinase
is similar to:
PaperBLAST

KHSE_METMP / Q6M0H5: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Methanococcus maripaludis

42% id,
87% cov

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

36% id,
98% cov

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

36% id,
96% cov

More...

mvk C447_RS14880 C447_15111 WP_007695331.1: mevalonate kinase
is similar to:
PaperBLAST

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli
ThrB / b0003: homoserine kinase (EC 2.7.1.39) from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC 2.7.1.39 from Escherichia coli
thrB / P00547: homoserine kinase (EC 2.7.1.39) from Escherichia coli

24% id,
85% cov

Echvi_2001: homoserine kinase (EC 2.7.1.39) from Echinicola vietnamensis

31% id,
61% cov

KHSE_ARATH / Q8L7R2: Homoserine kinase; Protein DOWNY MILDEW RESISTANT 1; EC 2.7.1.39 from Arabidopsis thaliana
hsk / Q8L7R2: homoserine kinase (EC 2.7.1.39) from Arabidopsis thaliana
Q8L7R2: homoserine kinase (EC 2.7.1.39) from Arabidopsis thaliana

32% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory