Curated BLAST for Genomes

 

Curated BLAST

Searching in Halococcus hamelinensis 100A6 (GCF_000336675.1)

Found 21 curated entries in PaperBLAST's database that match '4.2.3.1' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Halococcus hamelinensis 100A6, or try another query

thrC C447_RS04700 C447_04737 WP_007691417.1: threonine synthase
is similar to:
PaperBLAST

THRC_METAC / Q8TQD4: Threonine synthase; TS; EC 4.2.3.1 from Methanosarcina acetivorans
GB|AAM05023.1: threonine synthase; EC 4.2.3.1 from Methanosarcina acetivorans

56% id,
97% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

47% id,
97% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

44% id,
97% cov

More...

C447_RS07125 C447_07183 WP_007692347.1: threonine synthase
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

38% id,
90% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

37% id,
90% cov

THRC_METAC / Q8TQD4: Threonine synthase; TS; EC 4.2.3.1 from Methanosarcina acetivorans
GB|AAM05023.1: threonine synthase; EC 4.2.3.1 from Methanosarcina acetivorans

36% id,
91% cov

More...

C447_RS14440 C447_14676 WP_007695194.1: pyridoxal-phosphate dependent enzyme
is similar to:
PaperBLAST

THRC_METAC / Q8TQD4: Threonine synthase; TS; EC 4.2.3.1 from Methanosarcina acetivorans
GB|AAM05023.1: threonine synthase; EC 4.2.3.1 from Methanosarcina acetivorans

32% id,
92% cov

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

33% id,
90% cov

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

31% id,
89% cov

More...

ilvA C447_RS15055 C447_15281 WP_007695388.1: threonine ammonia-lyase
is similar to:
PaperBLAST

O66740: threonine synthase (EC 4.2.3.1) from Aquifex aeolicus

30% id,
84% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

28% id,
81% cov

ilvA C447_RS04825 C447_04867 WP_007691470.1: threonine ammonia-lyase
is similar to:
PaperBLAST

P83823: threonine synthase (EC 4.2.3.1) from Thermus thermophilus
Q5SL02: threonine synthase (EC 4.2.3.1) from Thermus thermophilus

26% id,
87% cov

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis

28% id,
75% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

193116-194381 (frame +3) on NZ_AOMB01000041.1 Halococcus hamelinensis 100A6 contig_41, whole genome shotgun sequence
is similar to:
PaperBLAST

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC 4.2.3.1 from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC 4.2.3.1) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

29% id,
91% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory