Curated BLAST for Genomes

 

Curated BLAST

Searching in Haloferax volcanii DS2 (GCF_000337315.1)

Found 8 curated entries in PaperBLAST's database that match '1.3.1.13' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Haloferax volcanii DS2, or try another query

C498_RS11765 C498_12168 WP_004043624.1: prephenate dehydrogenase/arogenate dehydrogenase family protein
is similar to:
PaperBLAST

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

30% id,
41% cov

C498_RS11725 C498_12128 WP_004043616.1: chorismate mutase
is similar to:
PaperBLAST

A8AAX2: prephenate dehydrogenase (NADP+) (EC 1.3.1.13) from Ignicoccus hospitalis

27% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory