Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardiopsis lucentensis DSM 44048 (GCF_000341125.1)

Found 3 curated entries in PaperBLAST's database that match '2.5.1.113' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Nocardiopsis lucentensis DSM 44048, or try another query

D471_RS0120240 WP_017600305.1: cysteine synthase
is similar to:
PaperBLAST

CYSM_MYCTU / P9WP53: O-phosphoserine sulfhydrylase; OPS sulfhydrylase; CysO-thiocarboxylate-dependent cysteine synthase; Cysteine synthase B; CSase B; O-phosphoserine-specific cysteine synthase; [CysO sulfur-carrier protein]-thiocarboxylate-dependent cysteine synthase; EC 2.5.1.113 from Mycobacterium tuberculosis
cysM / P9WP53: CysO-thiocarboxylate-dependent cysteine synthase monomer (EC 2.5.1.113) from Mycobacterium tuberculosis
P9WP53: [CysO sulfur-carrier protein]-thiocarboxylate-dependent cysteine synthase (EC 2.5.1.113); O-phosphoserine sulfhydrylase (EC 2.5.1.65) from Mycobacterium tuberculosis

73% id,
99% cov

D471_RS0107595 WP_017598059.1: cystathionine beta-synthase
is similar to:
PaperBLAST

CYSM_MYCTU / P9WP53: O-phosphoserine sulfhydrylase; OPS sulfhydrylase; CysO-thiocarboxylate-dependent cysteine synthase; Cysteine synthase B; CSase B; O-phosphoserine-specific cysteine synthase; [CysO sulfur-carrier protein]-thiocarboxylate-dependent cysteine synthase; EC 2.5.1.113 from Mycobacterium tuberculosis
cysM / P9WP53: CysO-thiocarboxylate-dependent cysteine synthase monomer (EC 2.5.1.113) from Mycobacterium tuberculosis
P9WP53: [CysO sulfur-carrier protein]-thiocarboxylate-dependent cysteine synthase (EC 2.5.1.113); O-phosphoserine sulfhydrylase (EC 2.5.1.65) from Mycobacterium tuberculosis

38% id,
93% cov

D471_RS0112200 WP_017598874.1: pyridoxal-phosphate dependent enzyme
is similar to:
PaperBLAST

CYSM_MYCTU / P9WP53: O-phosphoserine sulfhydrylase; OPS sulfhydrylase; CysO-thiocarboxylate-dependent cysteine synthase; Cysteine synthase B; CSase B; O-phosphoserine-specific cysteine synthase; [CysO sulfur-carrier protein]-thiocarboxylate-dependent cysteine synthase; EC 2.5.1.113 from Mycobacterium tuberculosis
cysM / P9WP53: CysO-thiocarboxylate-dependent cysteine synthase monomer (EC 2.5.1.113) from Mycobacterium tuberculosis
P9WP53: [CysO sulfur-carrier protein]-thiocarboxylate-dependent cysteine synthase (EC 2.5.1.113); O-phosphoserine sulfhydrylase (EC 2.5.1.65) from Mycobacterium tuberculosis

35% id,
93% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory