Curated BLAST for Genomes

 

Curated BLAST

Searching in Nocardiopsis baichengensis YIM 90130 (GCF_000341205.1)

Found 52 curated entries in PaperBLAST's database that match '4.3.1.17' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Nocardiopsis baichengensis YIM 90130, or try another query

C892_RS0108030 WP_017539971.1: L-serine ammonia-lyase
is similar to:		 PaperBLAST

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

 64% id,
100% cov

RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis

 59% id,
100% cov

BPHYT_RS19340: L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans

 59% id,
100% cov

More...

C892_RS0103010 WP_017555996.1: L-serine ammonia-lyase
is similar to:		 PaperBLAST

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

 62% id,
100% cov

AO353_15500: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

 60% id,
100% cov

Pf1N1B4_1013: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

 60% id,
100% cov

More...

C892_RS0100740 WP_017555605.1: threonine/serine dehydratase
is similar to:		 PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

 51% id,
99% cov

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

 39% id,
94% cov

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Arabidopsis thaliana

 39% id,
93% cov

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C892_RS0113825 WP_017557702.1: pyridoxal-phosphate dependent enzyme
is similar to:		 PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

 37% id,
98% cov

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

 32% id,
93% cov

SRR_MOUSE / Q9QZX7: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Mus musculus

 32% id,
91% cov

More...

C892_RS0100860 WP_017537389.1: threonine/serine dehydratase
is similar to:		 PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

 37% id,
97% cov

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

 34% id,
95% cov

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

 34% id,
93% cov

More...

thrC C892_RS0104095 WP_017556183.1: threonine synthase
is similar to:		 PaperBLAST

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; Cancerous serine dehydratase; cSDH; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; SDHL; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

 26% id,
98% cov

SDHL_HUMAN / P20132: L-serine dehydratase/L-threonine deaminase; SDH; Hepatic serine dehydratase; hSDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens
SDS / P20132: L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
P20132: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

 25% id,
95% cov

C892_RS28370 WP_017555818.1: pyridoxal-phosphate dependent enzyme
is similar to:		 PaperBLAST

A0QY48: L-serine ammonia-lyase (EC 4.3.1.17) from Mycolicibacterium smegmatis

 31% id,
74% cov

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; Cancerous serine dehydratase; cSDH; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; SDHL; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

 28% id,
71% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

 33% id,
59% cov

thrC C892_RS0118400 WP_017558365.1: threonine synthase
is similar to:		 PaperBLAST

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; Cancerous serine dehydratase; cSDH; Glutamate racemase; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; SDHL; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 5.1.1.3; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
Q96GA7: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

 25% id,
91% cov

SDHL_HUMAN / P20132: L-serine dehydratase/L-threonine deaminase; SDH; Hepatic serine dehydratase; hSDH; L-serine deaminase; L-threonine dehydratase; TDH; EC 4.3.1.17; EC 4.3.1.19 from Homo sapiens
SDS / P20132: L-serine dehydratase (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens
P20132: L-serine ammonia-lyase (EC 4.3.1.17) from Homo sapiens

 26% id,
81% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

 29% id,
71% cov

More...

trpB C892_RS0115035 WP_017557890.1: tryptophan synthase subunit beta
is similar to:		 PaperBLAST

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

 26% id,
67% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

 26% id,
60% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

 28% id,
49% cov

More...

C892_RS0118110 WP_017538299.1: cysteine synthase
is similar to:		 PaperBLAST

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

 26% id,
54% cov

C892_RS0119520 WP_040685506.1: PLP-dependent cysteine synthase family protein
is similar to:		 PaperBLAST

SRR_HUMAN / Q9GZT4: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Homo sapiens

 26% id,
53% cov

cysK C892_RS0122970 WP_017559104.1: cysteine synthase A
is similar to:		 PaperBLAST

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

 29% id,
40% cov

C892_RS0106340 WP_017556534.1: cystathionine beta-synthase
is similar to:		 PaperBLAST

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

 28% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory