Curated BLAST for Genomes

 

Curated BLAST

Searching in Gracilibacillus halophilus YIM-C55.5 (GCF_000359605.1)

Found 3 curated entries in PaperBLAST's database that match 'sorbitol-6-phosphate dehydrogenase' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Gracilibacillus halophilus YIM-C55.5, or try another query

J416_RS04110 J416_04396 WP_003465757.1: SDR family oxidoreductase
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

35% id,
99% cov

srlD: sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli

29% id,
99% cov

srlD / GI|2342569: sorbitol-6-phosphate dehydrogenase from Erwinia amylovora

28% id,
99% cov

fabG J416_RS00905 J416_00979 WP_003462994.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

srlD: sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli

35% id,
100% cov

srlD / GI|2342569: sorbitol-6-phosphate dehydrogenase from Erwinia amylovora

31% id,
100% cov

kduD J416_RS09900 J416_10446 WP_003469955.1: 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

32% id,
98% cov

J416_RS11750 J416_12377 WP_003472283.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

srlD / GI|2342569: sorbitol-6-phosphate dehydrogenase from Erwinia amylovora

28% id,
98% cov

srlD: sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli

27% id,
98% cov

J416_RS05700 J416_06003 WP_003466622.1: SDR family oxidoreductase
is similar to:
PaperBLAST

srlD: sorbitol-6-phosphate dehydrogenase; EC 1.1.1.140 from Escherichia coli

30% id,
83% cov

srlD / GI|2342569: sorbitol-6-phosphate dehydrogenase from Erwinia amylovora

32% id,
75% cov

J416_RS01480 J416_01584 WP_003463368.1: SDR family oxidoreductase
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

25% id,
96% cov

J416_RS09640 J416_10176 WP_003469769.1: SDR family oxidoreductase
is similar to:
PaperBLAST

srlD / Q9X671: sorbitol-6-phosphate dehydrogenase subunit (EC 1.1.1.140) from Streptococcus mutans

30% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory